Now showing items 1-6 of 6
Improving data workflow systems with cloud services and use of open data for bioinformatics research
(Oxford University Press, 2017-04-16)
Data workflow systems (DWFSs) enable bioinformatics researchers to combine components for data access and data analytics, and to share the final data analytics approach with their collaborators. Increasingly, such systems ...
SAFE: SPARQL federation over RDF data cubes with access control
(BioMed Central, 2017-02-01)
Several query federation engines have been proposed for accessing public Linked Open Data sources. However, in many domains, resources are sensitive and access to these resources is tightly controlled by stakeholders; ...
Querying web polystores
The database, semantic web, and linked data communities have proposed solutions that federate queries over multiple data sources using a single data model. Nowadays, the data retrieval requirements originating from versatile ...
Linked functional annotation for differentially expressed gene (DEG) demonstrated using Illumina Body Map 2.0
Semantic Web technologies are core for the integration of disparate data resources. It can be used to exploit data from next generation sequencing (NGS) for therapeutic decisions regarding cancer. In this manuscript, ...
Where to search top-K biomedical ontologies?
(Oxford University Press, 2018-03-20)
Motivation Searching for precise terms and terminological definitions in the biomedical data space is problematic, as researchers find overlapping, closely related and even equivalent concepts in a single or multiple ...
Towards precision medicine: discovering novel gynecological cancer biomarkers and pathways using linked data
(BioMed Central, 2017-09-19)
Next Generation Sequencing (NGS) is playing a key role in therapeutic decision making for the cancer prognosis and treatment. The NGS technologies are producing a massive amount of sequencing datasets. Often, these datasets ...